Are you using the Undeposited Funds Workflow? Payments are setup to export to Undeposited Funds (unless you manually changed them to Journal Entry to a different account). This video is a great overview of how to use undeposited funds to do deposits. https://www.youtube.com/watch?v=Y-auSY7OfHM
I've tried reviewing the all payments report and trying to tie it to the cash deposits. I assumed I would be able to match cash deposits to the totals of the batch numbers on the all payments report, but that is not working.